IL_6SJ6_076

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

6SJ6|1|A|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_076 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2035

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SJ6|1|A|G|2764
6SJ6|1|A|A|2765
6SJ6|1|A|U|2766
6SJ6|1|A|A|2767
6SJ6|1|A|A|2768
6SJ6|1|A|G|2769
*
6SJ6|1|A|U|2789
6SJ6|1|A|G|2790
6SJ6|1|A|A|2791
6SJ6|1|A|A|2792
6SJ6|1|A|G|2793
6SJ6|1|A|C|2794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L13