IL_6SJ6_083
3D structure
- PDB id
- 6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GUCG*CCGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SJ6_083 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3156
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6SJ6|1|B|G|77
6SJ6|1|B|U|78
6SJ6|1|B|C|79
6SJ6|1|B|G|80
*
6SJ6|1|B|C|91
6SJ6|1|B|C|92
6SJ6|1|B|G|93
6SJ6|1|B|C|94
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L30
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Y
- 50S ribosomal protein L25
Coloring options: