IL_6SJ6_103

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGUAG*CGGGCA

Length

11 nucleotides

Bulged bases

6SJ6|1|A|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_103 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.3545

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SJ6|1|A|U|2106
6SJ6|1|A|G|2107
6SJ6|1|A|U|2108
6SJ6|1|A|A|2109
6SJ6|1|A|G|2110
*
6SJ6|1|A|C|2263
6SJ6|1|A|G|2264
6SJ6|1|A|G|2265
6SJ6|1|A|G|2266
6SJ6|1|A|C|2267
6SJ6|1|A|A|2268

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28