IL_6SJ6_104

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGGUUC*GGCCA

Length

11 nucleotides

Bulged bases

6SJ6|1|A|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_104 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3677

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SJ6|1|A|U|2425
6SJ6|1|A|G|2426
6SJ6|1|A|G|2427
6SJ6|1|A|U|2428
6SJ6|1|A|U|2429
6SJ6|1|A|C|2430
*
6SJ6|1|A|G|2441
6SJ6|1|A|G|2442
6SJ6|1|A|C|2443
6SJ6|1|A|C|2444
6SJ6|1|A|A|2445

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15