IL_6SJ6_117

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UAG*CGAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_117 not in the Motif Atlas

Homologous match to IL_9DFE_011

Geometric discrepancy: 0.2404

The information below is about IL_9DFE_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6SJ6|1|A|U|336
6SJ6|1|A|A|337
6SJ6|1|A|G|338
*
6SJ6|1|A|C|386
6SJ6|1|A|G|387
6SJ6|1|A|A|388
6SJ6|1|A|A|389
6SJ6|1|A|A|390

Current chains

Chain A

23S ribosomal RNA

Nearby chains