IL_6SKF_081

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCGAG*CGUCGAAC

Length

13 nucleotides

Bulged bases

6SKF|1|BA|C|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_081 not in the Motif Atlas

Homologous match to IL_4V9F_004

Geometric discrepancy: 0.2156

The information below is about IL_4V9F_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

6SKF|1|BA|G|90
6SKF|1|BA|C|91
6SKF|1|BA|G|92
6SKF|1|BA|A|93
6SKF|1|BA|G|94
*
6SKF|1|BA|C|106
6SKF|1|BA|G|107
6SKF|1|BA|U|108
6SKF|1|BA|C|109
6SKF|1|BA|G|110
6SKF|1|BA|A|111
6SKF|1|BA|A|112
6SKF|1|BA|C|113

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L24

Chain BZ

50S ribosomal protein L29