IL_6SKF_094

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAG*CGUAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_094 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3789

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6SKF|1|BA|C|329
6SKF|1|BA|G|330
6SKF|1|BA|A|331
6SKF|1|BA|A|332
6SKF|1|BA|G|333
*
6SKF|1|BA|C|382
6SKF|1|BA|G|383
6SKF|1|BA|U|384
6SKF|1|BA|A|385
6SKF|1|BA|A|386
6SKF|1|BA|G|387

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L24