IL_6SKF_099

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCAC*GGG(5MU)GAAAAGAGC

Length

17 nucleotides

Bulged bases

6SKF|1|BA|G|545

QA status

Modified nucleotides: 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_099 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1571

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

6SKF|1|BA|G|520
6SKF|1|BA|C|521
6SKF|1|BA|A|522
6SKF|1|BA|C|523
*
6SKF|1|BA|G|534
6SKF|1|BA|G|535
6SKF|1|BA|G|536
6SKF|1|BA|5MU|537
6SKF|1|BA|G|538
6SKF|1|BA|A|539
6SKF|1|BA|A|540
6SKF|1|BA|A|541
6SKF|1|BA|A|542
6SKF|1|BA|G|543
6SKF|1|BA|A|544
6SKF|1|BA|G|545
6SKF|1|BA|C|546

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L22

Chain BX

50S ribosomal protein L24

Chain Bi

50S ribosomal protein L39e