IL_6SKF_104

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_104 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.1572

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6SKF|1|BA|C|598
6SKF|1|BA|G|599
6SKF|1|BA|A|600
6SKF|1|BA|A|601
6SKF|1|BA|G|602
*
6SKF|1|BA|C|626
6SKF|1|BA|G|627
6SKF|1|BA|A|628
6SKF|1|BA|G|629

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e