IL_6SKF_109

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGU*G(OMC)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_109 not in the Motif Atlas

Geometric match to IL_7A0S_026

Geometric discrepancy: 0.1359

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6SKF|1|BA|G|695
6SKF|1|BA|G|696
6SKF|1|BA|U|697
*
6SKF|1|BA|G|717
6SKF|1|BA|OMC|718
6SKF|1|BA|C|719

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e