IL_6SKF_111

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAGG*CG

Length

6 nucleotides

Bulged bases

6SKF|1|BA|A|734, 6SKF|1|BA|G|735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_111 not in the Motif Atlas

Homologous match to IL_4V9F_021

Geometric discrepancy: 0.0898

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

6SKF|1|BA|C|733
6SKF|1|BA|A|734
6SKF|1|BA|G|735
6SKF|1|BA|G|736
*
6SKF|1|BA|C|761
6SKF|1|BA|G|762

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S ribosomal protein L15

Chain BR

50S ribosomal protein L18e