IL_6SKF_114

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

C(4AC)GG*C(4AC)GG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_114 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.1952

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

6SKF|1|BA|C|804
6SKF|1|BA|4AC|805
6SKF|1|BA|G|806
6SKF|1|BA|G|807
*
6SKF|1|BA|C|924
6SKF|1|BA|4AC|925
6SKF|1|BA|G|926
6SKF|1|BA|G|927

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e