IL_6SKF_122
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CGGAG*CGUAGAUG
- Length
- 13 nucleotides
- Bulged bases
- 6SKF|1|BA|A|1062
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKF_122 not in the Motif Atlas
- Homologous match to IL_4V9F_031
- Geometric discrepancy: 0.3676
- The information below is about IL_4V9F_031
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_94910.1
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6SKF|1|BA|C|971
6SKF|1|BA|G|972
6SKF|1|BA|G|973
6SKF|1|BA|A|974
6SKF|1|BA|G|975
*
6SKF|1|BA|C|1059
6SKF|1|BA|G|1060
6SKF|1|BA|U|1061
6SKF|1|BA|A|1062
6SKF|1|BA|G|1063
6SKF|1|BA|A|1064
6SKF|1|BA|U|1065
6SKF|1|BA|G|1066
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BR
- 50S ribosomal protein L18e
- Chain BU
- 50S ribosomal protein L21e
- Chain Ba
- 50S ribosomal protein L30
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