IL_6SKF_124

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGUAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_124 not in the Motif Atlas

Homologous match to IL_4V9F_033

Geometric discrepancy: 0.1212

The information below is about IL_4V9F_033

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SKF|1|BA|G|987
6SKF|1|BA|G|988
6SKF|1|BA|U|989
6SKF|1|BA|A|990
6SKF|1|BA|G|991
*
6SKF|1|BA|C|1044
6SKF|1|BA|G|1045
6SKF|1|BA|A|1046
6SKF|1|BA|A|1047
6SKF|1|BA|C|1048

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L18

Chain BU

50S ribosomal protein L21e