IL_6SKF_130

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

6SKF|1|BA|G|1288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_130 not in the Motif Atlas

Homologous match to IL_4V9F_037

Geometric discrepancy: 0.116

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6SKF|1|BA|U|1125
6SKF|1|BA|U|1126
6SKF|1|BA|A|1127
6SKF|1|BA|A|1128
6SKF|1|BA|G|1129
*
6SKF|1|BA|C|1285
6SKF|1|BA|G|1286
6SKF|1|BA|A|1287
6SKF|1|BA|G|1288
6SKF|1|BA|A|1289

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain Ba

50S ribosomal protein L30

Chain Bd

50S ribosomal protein L32e