IL_6SKF_131

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CCCCAAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_131 not in the Motif Atlas

Homologous match to IL_4V9F_038

Geometric discrepancy: 0.1122

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6SKF|1|BA|C|1131
6SKF|1|BA|C|1132
6SKF|1|BA|C|1133
6SKF|1|BA|C|1134
6SKF|1|BA|A|1135
6SKF|1|BA|A|1136
6SKF|1|BA|A|1137
6SKF|1|BA|G|1138
*
6SKF|1|BA|C|1282
6SKF|1|BA|G|1283

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BK

50S ribosomal protein L13

Chain Ba

50S ribosomal protein L30