IL_6SKF_140

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

A(OMU)GG*C(4AC)GU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_140 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1807

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6SKF|1|BA|A|1339
6SKF|1|BA|OMU|1340
6SKF|1|BA|G|1341
6SKF|1|BA|G|1342
*
6SKF|1|BA|C|1374
6SKF|1|BA|4AC|1375
6SKF|1|BA|G|1376
6SKF|1|BA|U|1377

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain Bd

50S ribosomal protein L32e