IL_6SKF_142

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(OMG)G(A2M)GUAGC*G(OMC)GAAACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, A2M, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_142 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.2515

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|G|1397
6SKF|1|BA|OMG|1398
6SKF|1|BA|G|1399
6SKF|1|BA|A2M|1400
6SKF|1|BA|G|1401
6SKF|1|BA|U|1402
6SKF|1|BA|A|1403
6SKF|1|BA|G|1404
6SKF|1|BA|C|1405
*
6SKF|1|BA|G|2123
6SKF|1|BA|OMC|2124
6SKF|1|BA|G|2125
6SKF|1|BA|A|2126
6SKF|1|BA|A|2127
6SKF|1|BA|A|2128
6SKF|1|BA|C|2129
6SKF|1|BA|C|2130

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BV

50S ribosomal protein L22