IL_6SKF_146

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6SKF|1|BA|G|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_146 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.1705

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6SKF|1|BA|G|1455
6SKF|1|BA|C|1456
6SKF|1|BA|A|1457
6SKF|1|BA|A|1458
6SKF|1|BA|U|1459
*
6SKF|1|BA|A|1467
6SKF|1|BA|G|1468
6SKF|1|BA|C|1469

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BV

50S ribosomal protein L22

Chain Bi

50S ribosomal protein L39e