IL_6SKF_152

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUAG*CGAUC

Length

9 nucleotides

Bulged bases

6SKF|1|BA|U|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_152 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.1294

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6SKF|1|BA|G|1590
6SKF|1|BA|U|1591
6SKF|1|BA|A|1592
6SKF|1|BA|G|1593
*
6SKF|1|BA|C|1697
6SKF|1|BA|G|1698
6SKF|1|BA|A|1699
6SKF|1|BA|U|1700
6SKF|1|BA|C|1701

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e