IL_6SKF_154

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUAAG*CGAAUG

Length

11 nucleotides

Bulged bases

6SKF|1|BA|U|1672

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_154 not in the Motif Atlas

Geometric match to IL_5TBW_071

Geometric discrepancy: 0.1805

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6SKF|1|BA|C|1616
6SKF|1|BA|U|1617
6SKF|1|BA|A|1618
6SKF|1|BA|A|1619
6SKF|1|BA|G|1620
*
6SKF|1|BA|C|1668
6SKF|1|BA|G|1669
6SKF|1|BA|A|1670
6SKF|1|BA|A|1671
6SKF|1|BA|U|1672
6SKF|1|BA|G|1673

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e