IL_6SKF_165

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUC*G(OMG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_165 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1642

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6SKF|1|BA|G|1921
6SKF|1|BA|U|1922
6SKF|1|BA|C|1923
*
6SKF|1|BA|G|1952
6SKF|1|BA|OMG|1953
6SKF|1|BA|C|1954

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bg

50S ribosomal protein L37Ae