IL_6SKF_177

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AA(OMG)C*GCUAU

Length

9 nucleotides

Bulged bases

6SKF|1|BA|A|2167, 6SKF|1|BA|U|2717, 6SKF|1|BA|A|2718

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_177 not in the Motif Atlas

Geometric match to IL_7RQB_079

Geometric discrepancy: 0.221

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6SKF|1|BA|A|2166
6SKF|1|BA|A|2167
6SKF|1|BA|OMG|2168
6SKF|1|BA|C|2169
*
6SKF|1|BA|G|2715
6SKF|1|BA|C|2716
6SKF|1|BA|U|2717
6SKF|1|BA|A|2718
6SKF|1|BA|U|2719

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BV

50S ribosomal protein L22