IL_6SKF_201

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6SKF|1|BA|A|2676, 6SKF|1|BA|C|2677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_201 not in the Motif Atlas

Homologous match to IL_4V9F_088

Geometric discrepancy: 0.0823

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6SKF|1|BA|C|2616
6SKF|1|BA|U|2617
*
6SKF|1|BA|A|2675
6SKF|1|BA|A|2676
6SKF|1|BA|C|2677
6SKF|1|BA|G|2678

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L13

Chain BL

50S ribosomal protein L14