IL_6SKF_216

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGC*G(5MC)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_216 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.1891

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6SKF|1|BA|G|2844
6SKF|1|BA|G|2845
6SKF|1|BA|C|2846
*
6SKF|1|BA|G|2862
6SKF|1|BA|5MC|2863
6SKF|1|BA|C|2864

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L13

Chain Bj

50S ribosomal protein L40e