IL_6SKF_249

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGCAG*(OMC)G(A2M)GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_249 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.1215

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6SKF|1|BA|C|739
6SKF|1|BA|G|740
6SKF|1|BA|C|741
6SKF|1|BA|A|742
6SKF|1|BA|G|743
*
6SKF|1|BA|OMC|754
6SKF|1|BA|G|755
6SKF|1|BA|A2M|756
6SKF|1|BA|G|757
6SKF|1|BA|G|758

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L18e