IL_6SKF_262

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(OMC)GAAAUUC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6SKF|1|BA|A|2051, 6SKF|1|BA|U|2057, 6SKF|1|BA|U|2076

QA status

Modified nucleotides: OMC, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKF_262 not in the Motif Atlas

Geometric match to IL_8VTW_076

Geometric discrepancy: 0.1092

The information below is about IL_8VTW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6SKF|1|BA|OMC|2047
6SKF|1|BA|G|2048
6SKF|1|BA|A|2049
6SKF|1|BA|A|2050
6SKF|1|BA|A|2051
6SKF|1|BA|U|2052
6SKF|1|BA|U|2053
6SKF|1|BA|C|2054
6SKF|1|BA|5MC|2055
6SKF|1|BA|U|2056
6SKF|1|BA|U|2057
6SKF|1|BA|G|2058
*
6SKF|1|BA|C|2074
6SKF|1|BA|5MC|2075
6SKF|1|BA|U|2076
6SKF|1|BA|G|2077

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Bk

LSU ribosomal protein L41E