IL_6SKG_071
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_071 not in the Motif Atlas
- Homologous match to IL_4V9F_001
- Geometric discrepancy: 0.1332
- The information below is about IL_4V9F_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SKG|1|BA|G|33
6SKG|1|BA|U|34
6SKG|1|BA|G|35
6SKG|1|BA|G|36
6SKG|1|BA|A|37
6SKG|1|BA|U|38
6SKG|1|BA|G|39
*
6SKG|1|BA|C|547
6SKG|1|BA|U|548
6SKG|1|BA|G|549
6SKG|1|BA|A|550
6SKG|1|BA|A|551
6SKG|1|BA|A|552
6SKG|1|BA|C|553
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L4
- Chain BV
- 50S ribosomal protein L22
- Chain Bd
- 50S ribosomal protein L32e
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