IL_6SKG_091

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCAC*GGGUGAAAAGAGC

Length

17 nucleotides

Bulged bases

6SKG|1|BA|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_091 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1731

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|G|520
6SKG|1|BA|C|521
6SKG|1|BA|A|522
6SKG|1|BA|C|523
*
6SKG|1|BA|G|534
6SKG|1|BA|G|535
6SKG|1|BA|G|536
6SKG|1|BA|U|537
6SKG|1|BA|G|538
6SKG|1|BA|A|539
6SKG|1|BA|A|540
6SKG|1|BA|A|541
6SKG|1|BA|A|542
6SKG|1|BA|G|543
6SKG|1|BA|A|544
6SKG|1|BA|G|545
6SKG|1|BA|C|546

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L22

Chain BX

50S ribosomal protein L24

Chain Bi

50S ribosomal protein L39e