IL_6SKG_123

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GG(5MC)GGAAG*UGGAC

Length

13 nucleotides

Bulged bases

6SKG|1|BA|G|1346

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_123 not in the Motif Atlas

Homologous match to IL_4V9F_048

Geometric discrepancy: 0.1111

The information below is about IL_4V9F_048

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6SKG|1|BA|G|1343
6SKG|1|BA|G|1344
6SKG|1|BA|5MC|1345
6SKG|1|BA|G|1346
6SKG|1|BA|G|1347
6SKG|1|BA|A|1348
6SKG|1|BA|A|1349
6SKG|1|BA|G|1350
*
6SKG|1|BA|U|1369
6SKG|1|BA|G|1370
6SKG|1|BA|G|1371
6SKG|1|BA|A|1372
6SKG|1|BA|C|1373

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain Bd

50S ribosomal protein L32e