IL_6SKG_133

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UAUAAG*UGAAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_133 not in the Motif Atlas

Geometric match to IL_9E6Q_072

Geometric discrepancy: 0.3836

The information below is about IL_9E6Q_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6SKG|1|BA|U|1623
6SKG|1|BA|A|1624
6SKG|1|BA|U|1625
6SKG|1|BA|A|1626
6SKG|1|BA|A|1627
6SKG|1|BA|G|1628
*
6SKG|1|BA|U|1660
6SKG|1|BA|G|1661
6SKG|1|BA|A|1662
6SKG|1|BA|A|1663
6SKG|1|BA|A|1664
6SKG|1|BA|G|1665

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Be

50S ribosomal protein L34e