IL_6SKG_181

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUGAG*CGAAAACAG

Length

14 nucleotides

Bulged bases

6SKG|1|BA|A|2879, 6SKG|1|BA|C|2882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_181 not in the Motif Atlas

Homologous match to IL_4V9F_091

Geometric discrepancy: 0.1646

The information below is about IL_4V9F_091

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6SKG|1|BA|C|2740
6SKG|1|BA|U|2741
6SKG|1|BA|G|2742
6SKG|1|BA|A|2743
6SKG|1|BA|G|2744
*
6SKG|1|BA|C|2876
6SKG|1|BA|G|2877
6SKG|1|BA|A|2878
6SKG|1|BA|A|2879
6SKG|1|BA|A|2880
6SKG|1|BA|A|2881
6SKG|1|BA|C|2882
6SKG|1|BA|A|2883
6SKG|1|BA|G|2884

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L13