IL_6SNT_043

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

6SNT|1|1|C|1016, 6SNT|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_043 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.1808

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6SNT|1|1|G|1013
6SNT|1|1|U|1014
6SNT|1|1|U|1015
6SNT|1|1|C|1016
6SNT|1|1|C|1017
6SNT|1|1|G|1018
*
6SNT|1|1|U|1034
6SNT|1|1|G|1035
6SNT|1|1|A|1036
6SNT|1|1|C|1037

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain p

60S ribosomal protein L10

Chain q

60S ribosomal protein L11-A