IL_6SNT_059
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_059 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.075
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6SNT|1|1|G|1444
6SNT|1|1|U|1445
6SNT|1|1|A|1446
6SNT|1|1|G|1447
6SNT|1|1|U|1448
6SNT|1|1|A|1449
6SNT|1|1|G|1450
*
6SNT|1|1|C|2354
6SNT|1|1|G|2355
6SNT|1|1|A|2356
6SNT|1|1|A|2357
6SNT|1|1|A|2358
6SNT|1|1|C|2359
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain j
- 60S ribosomal protein L4-A
- Chain v
- 60S ribosomal protein L17-A
Coloring options: