3D structure

PDB id
6SNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome stalled on SDD1 mRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGGAAUU*GGAGAUG
Length
14 nucleotides
Bulged bases
6SNT|1|1|U|1716, 6SNT|1|1|A|1729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SNT_071 not in the Motif Atlas
Homologous match to IL_5TBW_073
Geometric discrepancy: 0.0996
The information below is about IL_5TBW_073
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

6SNT|1|1|C|1711
6SNT|1|1|G|1712
6SNT|1|1|G|1713
6SNT|1|1|A|1714
6SNT|1|1|A|1715
6SNT|1|1|U|1716
6SNT|1|1|U|1717
*
6SNT|1|1|G|1727
6SNT|1|1|G|1728
6SNT|1|1|A|1729
6SNT|1|1|G|1730
6SNT|1|1|A|1731
6SNT|1|1|U|1732
6SNT|1|1|G|1733

Current chains

Chain 1
Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain N
40S ribosomal protein S13
Chain aa
60S ribosomal protein L43-A
Chain aj
60S ribosomal protein L34-A
Chain an
60S ribosomal protein L30
Chain aq
60S ribosomal protein L27-A
Chain x
60S ribosomal protein L19-A

Coloring options:


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