IL_6SNT_113
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_113 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1127
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6SNT|1|1|C|3018
6SNT|1|1|U|3019
6SNT|1|1|U|3020
6SNT|1|1|A|3021
6SNT|1|1|G|3022
6SNT|1|1|U|3023
6SNT|1|1|A|3024
6SNT|1|1|C|3025
*
6SNT|1|1|G|3030
6SNT|1|1|G|3031
6SNT|1|1|A|3032
6SNT|1|1|A|3033
6SNT|1|1|C|3034
6SNT|1|1|A|3035
6SNT|1|1|G|3036
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain ad
- Ubiquitin-60S ribosomal protein L40
- Chain i
- 60S ribosomal protein L3
- Chain o
- 60S ribosomal protein L9-A
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