IL_6SNT_151

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

6SNT|1|2|U|313, 6SNT|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_151 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1029

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6SNT|1|2|U|311
6SNT|1|2|A|312
6SNT|1|2|U|313
6SNT|1|2|C|314
6SNT|1|2|A|315
6SNT|1|2|A|316
*
6SNT|1|2|U|348
6SNT|1|2|U|349
6SNT|1|2|U|350
6SNT|1|2|C|351
6SNT|1|2|A|352
6SNT|1|2|A|353
6SNT|1|2|C|354
6SNT|1|2|G|355

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A

Chain X

40S ribosomal protein S23-A