IL_6SNT_165
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 6SNT|1|2|A|579, 6SNT|1|2|U|581, 6SNT|1|2|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_165 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1173
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SNT|1|2|G|562
6SNT|1|2|U|563
6SNT|1|2|G|564
6SNT|1|2|C|565
6SNT|1|2|C|566
6SNT|1|2|A|567
6SNT|1|2|G|568
*
6SNT|1|2|C|575
6SNT|1|2|G|576
6SNT|1|2|G|577
6SNT|1|2|U|578
6SNT|1|2|A|579
6SNT|1|2|A|580
6SNT|1|2|U|581
6SNT|1|2|U|582
6SNT|1|2|C|583
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain 5
- mRNA
- Chain D
- 40S ribosomal protein S3
- Chain X
- 40S ribosomal protein S23-A
- Chain e
- 40S ribosomal protein S30-A
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