IL_6SNT_166

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6SNT|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_166 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.1066

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6SNT|1|2|G|616
6SNT|1|2|U|617
6SNT|1|2|U|618
6SNT|1|2|A|619
6SNT|1|2|A|620
6SNT|1|2|A|621
6SNT|1|2|A|622
*
6SNT|1|2|U|1104
6SNT|1|2|C|1105

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain a

40S ribosomal protein S26-A