IL_6SNT_182
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_182 not in the Motif Atlas
- Geometric match to IL_4V88_436
- Geometric discrepancy: 0.1644
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6SNT|1|2|C|990
6SNT|1|2|G|991
6SNT|1|2|A|992
6SNT|1|2|A|993
6SNT|1|2|G|994
*
6SNT|1|2|C|1010
6SNT|1|2|G|1011
6SNT|1|2|U|1012
6SNT|1|2|A|1013
6SNT|1|2|G|1014
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 40S ribosomal protein S14-A
- Chain a
- 40S ribosomal protein S26-A
- Chain h
- 60S ribosomal protein L2-A
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