IL_6SNT_189
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 6SNT|1|2|C|1158, 6SNT|1|2|C|1159
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_189 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.127
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
6SNT|1|2|A|1157
6SNT|1|2|C|1158
6SNT|1|2|C|1159
6SNT|1|2|A|1160
*
6SNT|1|2|U|1617
6SNT|1|2|C|1618
6SNT|1|2|C|1619
6SNT|1|2|C|1620
6SNT|1|2|U|1621
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain 5
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain U
- 40S ribosomal protein S20
- Chain a
- 40S ribosomal protein S26-A
- Chain c
- 40S ribosomal protein S28-B
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