IL_6SNT_198
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 6SNT|1|2|U|1432, 6SNT|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_198 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1082
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6SNT|1|2|U|1276
6SNT|1|2|G|1277
6SNT|1|2|G|1278
*
6SNT|1|2|U|1430
6SNT|1|2|C|1431
6SNT|1|2|U|1432
6SNT|1|2|G|1433
6SNT|1|2|U|1434
6SNT|1|2|G|1435
6SNT|1|2|A|1436
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain K
- 40S ribosomal protein S10-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- 40S ribosomal protein S29-A
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