IL_6SNT_236
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCAAC*GGA
- Length
- 8 nucleotides
- Bulged bases
- 6SNT|1|1|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_236 not in the Motif Atlas
- Homologous match to IL_8C3A_482
- Geometric discrepancy: 0.0987
- The information below is about IL_8C3A_482
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_04395.1
- Basepair signature
- cWW-cWS-tWH-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6SNT|1|1|U|1501
6SNT|1|1|C|1502
6SNT|1|1|A|1503
6SNT|1|1|A|1504
6SNT|1|1|C|1505
*
6SNT|1|1|G|1513
6SNT|1|1|G|1514
6SNT|1|1|A|1515
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ae
- 60S ribosomal protein L39
- Chain v
- 60S ribosomal protein L17-A
- Chain x
- 60S ribosomal protein L19-A
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