IL_6SNT_244
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6SNT|1|2|G|1228
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_244 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2673
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6SNT|1|2|A|1224
6SNT|1|2|U|1225
6SNT|1|2|A|1226
6SNT|1|2|A|1227
6SNT|1|2|G|1228
6SNT|1|2|G|1229
6SNT|1|2|A|1230
6SNT|1|2|U|1231
6SNT|1|2|U|1232
6SNT|1|2|G|1233
*
6SNT|1|2|C|1252
6SNT|1|2|U|1253
6SNT|1|2|U|1254
6SNT|1|2|G|1255
6SNT|1|2|A|1256
6SNT|1|2|U|1257
6SNT|1|2|U|1258
6SNT|1|2|U|1259
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain K
- 40S ribosomal protein S10-A
- Chain M
- 40S ribosomal protein S12
- Chain d
- 40S ribosomal protein S29-A
- Chain f
- Ubiquitin-40S ribosomal protein S31
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