IL_6SPB_037

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6SPB|1|A|U|1023

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_037 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0734

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6SPB|1|A|G|1021
6SPB|1|A|A|1022
6SPB|1|A|U|1023
6SPB|1|A|G|1024
*
6SPB|1|A|C|1111
6SPB|1|A|G|1112
6SPB|1|A|C|1113

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16