IL_6SPB_065

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6SPB|1|A|A|1788, 6SPB|1|A|C|1803, 6SPB|1|A|U|1807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1139

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6SPB|1|A|U|1785
6SPB|1|A|G|1786
6SPB|1|A|C|1787
6SPB|1|A|A|1788
6SPB|1|A|A|1789
6SPB|1|A|A|1790
6SPB|1|A|C|1791
*
6SPB|1|A|G|1800
6SPB|1|A|G|1801
6SPB|1|A|A|1802
6SPB|1|A|C|1803
6SPB|1|A|G|1804
6SPB|1|A|U|1805
6SPB|1|A|A|1806
6SPB|1|A|U|1807
6SPB|1|A|A|1808

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2