IL_6SPD_037

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

6SPD|1|A|U|1051

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_037 not in the Motif Atlas

Geometric match to IL_6PRV_001

Geometric discrepancy: 0.3779

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

6SPD|1|A|G|1049
6SPD|1|A|U|1050
6SPD|1|A|U|1051
6SPD|1|A|G|1052
*
6SPD|1|A|C|1066
6SPD|1|A|A|1067
6SPD|1|A|C|1068
6SPD|1|A|C|1069

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11

Chain M

50S ribosomal protein L16