IL_6SPD_063

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6SPD|1|A|A|1788, 6SPD|1|A|C|1803, 6SPD|1|A|U|1807

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_063 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.15

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6SPD|1|A|U|1785
6SPD|1|A|G|1786
6SPD|1|A|C|1787
6SPD|1|A|A|1788
6SPD|1|A|A|1789
6SPD|1|A|A|1790
6SPD|1|A|C|1791
*
6SPD|1|A|G|1800
6SPD|1|A|G|1801
6SPD|1|A|A|1802
6SPD|1|A|C|1803
6SPD|1|A|G|1804
6SPD|1|A|U|1805
6SPD|1|A|A|1806
6SPD|1|A|U|1807
6SPD|1|A|A|1808

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2