IL_6SPD_069

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

6SPD|1|A|A|1925, 6SPD|1|A|U|1931, 6SPD|1|A|U|1950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_069 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1704

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

6SPD|1|A|C|1921
6SPD|1|A|G|1922
6SPD|1|A|A|1923
6SPD|1|A|A|1924
6SPD|1|A|A|1925
6SPD|1|A|U|1926
6SPD|1|A|U|1927
6SPD|1|A|C|1928
6SPD|1|A|C|1929
6SPD|1|A|U|1930
6SPD|1|A|U|1931
6SPD|1|A|G|1932
*
6SPD|1|A|C|1948
6SPD|1|A|C|1949
6SPD|1|A|U|1950
6SPD|1|A|G|1951

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2