IL_6SPE_031
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGUAG*CGUAGAUA
- Length
- 13 nucleotides
- Bulged bases
- 6SPE|1|a|A|696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPE_031 not in the Motif Atlas
- Homologous match to IL_5J7L_035
- Geometric discrepancy: 0.1613
- The information below is about IL_5J7L_035
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_01488.3
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6SPE|1|a|U|678
6SPE|1|a|G|679
6SPE|1|a|U|680
6SPE|1|a|A|681
6SPE|1|a|G|682
*
6SPE|1|a|C|693
6SPE|1|a|G|694
6SPE|1|a|U|695
6SPE|1|a|A|696
6SPE|1|a|G|697
6SPE|1|a|A|698
6SPE|1|a|U|699
6SPE|1|a|A|700
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain k
- 30S ribosomal protein S11
Coloring options: